TriticeaeSSRdb: The Triticeae Simple Sequence Repeat Database
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Pan-Genome
Akashinriki
B1K-04-12
Barke
Golden_Promise
Hockett
HOR 10350
HOR 13821
HOR 13942
HOR 21599
HOR_3081
HOR 3365
HOR 7552
HOR 8148
HOR 9043
Igri
MorexV2
OUN333
RGT Planet
ZDM01467
ZDM02064
Species
Aegilops bicornis
Aegilops longissima
Aegilops searsii
Aegilops sharonensis
Aegilops speltoides
Aegilops tauschii
Aegilops umbellulata
Dasypyrum villosum
Hordeum marinum
Hordeum spontaneum
Hordeum vulgare
Hordeum vulgare
var.
nudum
Leymus chinensis
Thinopyrum elongatum
Triticum aestivum
Triticum aestivum
ssp.
tibetanum
Shao
Triticum dicoccoides
Triticum monococcum
Triticum spelta
Triticum turgidum
Triticum urartu
Tools
Blast
SSR Prediction(MISA)
SSR Prediction(Pytrf)
JBrowse
Help
Download
Contact
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Triticeae SSR Database
Home
Species
Aegilops bicornis
Aegilops longissima
Aegilops searsii
Aegilops sharonensis
Aegilops speltoides
Aegilops tauschii
Aegilops umbellulata
Dasypyrum villosum
Hordeum marinum
Hordeum spontaneum
Hordeum vulgare
Hordeum vulgare var. nudum
Leymus chinensis
Thinopyrum elongatum
Triticum aestivum
Triticum aestivum ssp. tibetanum Shao
Triticum dicoccoides
Triticum monococcum
Triticum spelta
Triticum turgidum
Triticum urartu
Tools
Blast
SSR Prediction(MISA)
SSR Prediction(Pytrf)
JBrowse
Help
Download
Contact
2
Distribution of SSR motif types
The most abundant motif category
B1K-04-12
B1K is a genetic collection of 1020 wild barley accessions from 51 sites in Israel, utilized to investigate genetic diversity and adaptation to environmental conditions.
Species:
B1K-04-12
Ploidy:
diploid
Chromosomes:
14
Genomic SSRs:
136,571
Genic SSRs:
4,166,601
Genome size:
5.80G
Assembly:
-
Genome URL:
B1K-04-12
Genome URL
Accession:
-
Region
Intergenic
Genic
Chromosomes (Multi select)
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clear
chr1H
chr2H
chr3H
chr4H
chr5H
chr6H
chr7H
chrUn
Microsatellite Characterstics (select any one)
Motify Type
Repeat Motif Type
All
Mono
Di
Tri
Tetra
Penta
Hexa
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Chromosome Location range(kbp)
Size of SSR(bp)
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Reference